Publications using samples from UAM's Genomic Resources

Arbogast BS 1999. Mitochondrial DNA phylogeography of the New World flying squirrels (Glaucomys): implications for Pleistocene biogeography. Journal of Mammalogy 80: 142-155. UAM specimens cited

Arbogast BS, Browne RA, Weigl PD 2001. Evolutionary genetics and Pleistocene biogeography of North American tree squirrels (Tamiasciurus). Journal of Mammalogy 82: 302-319. UAM specimens cited

Arnason U, Gullberg A, Janke A, Kullberg M, Lehman N, Petrov EA, Väinölä R 2006. Pinniped phylogeny and a new hypothesis for their origin and dispersal. Molecular Phylogenetics and Evolution 41: 345-354. UAM specimens cited

Bannikova AA, Dokuchaev NE, Yudina EV, Bobretzov AV, Sheftel BI, Lebedev VS 2010. Holarctic phylogeography of the tundra shrew (Sorex tundrensis) based on mitochondrial genes. Biological Journal of the Linnean Society 101: 721-746. UAM specimens cited

Becker PR, Koster BJ, Wise SA, Zeisler R 1993. Biological specimen banking in Arctic research: an Alaska perspective. Science of the Total Environment 139: 69-95. UAM specimens cited

Becker PR, Krahn MM, Mackey EA, Demiralp R, Schantz MM, Epstein MS, Donais MK, Porter BJ, Muir DC, Wise SA 2000. Concentrations of polychlorinated biphenyls (PCB’s), chlorinated pesticides, and heavy metals and other elements in tissues of belugas, Delphinapterus leucas, from Cook Inlet. Marine Fisheries Review 62: 81-98. UAM specimens cited

Bidlack AL, Cook JA 2002. A nuclear perspective on endemism in northern flying squirrels (Glaucomys sabrinus) of the Alexander Archipelago, Alaska. Conservation Genetics 3: 247-259. UAM specimens cited

Bidlack AL, Cook JA 2001. Reduced genetic variation in insular northern flying squirrels (Glaucomys sabrinus) along the North Pacific Coast. Animal Conservation 4: 283-290. UAM specimens cited

Bousquet Y, Bouchard P, Davies AE, Sikes DS 2013. Checklist of beetles (Coleoptera) of Canada and Alaska. ZooKeys 360:1-44. UAM specimens cited

Brunhoff C, Galbreath KE, Fedorov VB, Cook JA, Jaarola M 2003. Holarctic phylogeography of the root vole (Microtus oeconomus): implications for late Quaternary biogeography of high latitudes. Molecular Ecology 12: 957-968. UAM specimens cited

Chavez AS, Maher SP, Arbogast BS, Kenagy G 2014. Diversification and gene flow in nascent lineages of island and mainland North American tree squirrels (Tamiasciurus). Evolution 68: 1094-1109. UAM specimens cited

Conroy CJ, Cook JA 2000a. Phylogeography of a post-glacial colonizer: Microtus longicaudus (Rodentia: Muridae). Molecular Ecology 9: 165-175. UAM specimens cited

Conroy CJ, Cook JA 2000b. Molecular systematics of a Holarctic rodent (Microtus: Muridae). Journal of Mammalogy 81: 344-359. UAM specimens cited

Conroy CJ, Cook JA 1999. MtDNA evidence for repeated pulses of speciation within arvicoline and murid rodents. Journal of Mammalian Evolution 6: 221-245. UAM specimens cited

Conroy CJ, Neuwald JL 2008. Phylogeographic study of the California vole, Microtus californicus. Journal of Mammalogy 89: 755-767. UAM specimens cited

Cook JA, Bidlack AL, Conroy CJ, Demboski JR, Fleming MA, Runck AM, Stone KD, MacDonald SO 2001. A phylogeographic perspective on endemism in the Alexander Archipelago of southeast Alaska. Biological Conservation 97: 215-227. UAM specimens cited

Cook JA, Eddingsaas AA, Loxterman JL, Ebbert S, MacDonald S 2010. Insular arctic ground squirrels (Spermophilus parryii) of the North Pacific: indigenous or exotic? Journal of Mammalogy 91: 1401-1412. UAM specimens cited

Cook JA, Runck AM, Conroy CJ 2004. Historical biogeography at the crossroads of the northern continents: molecular phylogenetics of red-backed voles (Rodentia: Arvicolinae). Molecular Phylogenetics and Evolution 30: 767-777. UAM specimens cited

Dalén L, Fuglei E, Hersteinsson P, Kapel CM, Roth JD, Samelius G, Tannerfeldt M, Angerbjörn A 2005. Population history and genetic structure of a circumpolar species: the arctic fox. Biological Journal of the Linnean Society 84: 79-89. UAM specimens cited

Dalerum F, Loxterman J, Shults B, Kunkel K, Cook JA 2007. Sex-specific dispersal patterns of wolverines: insights from microsatellite markers. Journal of Mammalogy 88: 793-800. UAM specimens cited

Dekonenko A, Yakimenko V, Ivanov A, Morozov V, Nikitin P, Khasanova S, Dzagurova T, Tkachenko E, Schmaljohn C 2003. Genetic similarity of Puumala viruses found in Finland and western Siberia and of the mitochondrial DNA of their rodent hosts suggests a common evolutionary origin. Infection, Genetics and Evolution 3: 245-257. UAM specimens cited

Demboski JR, Cook JA 2003. Phylogenetic diversification within the Sorex cinereus group (Soricidae). Journal of Mammalogy 84: 144-158. UAM specimens cited

Demboski JR, Cook JA 2001. Phylogeography of the dusky shrew, Sorex monticolus (Insectivora, Soricidae): insight into deep and shallow history in northwestern North America. Molecular Ecology 10: 1227-1240. UAM specimens cited

Demboski JR, Jacobsen BK, Cook JA 1998. Implications of cytochrome b sequence variation for biogeography and conservation of the northern flying squirrels (Glaucomys sabrinus) of the Alexander Archipelago, Alaska. Canadian Journal of Zoology 76: 1771-1777. UAM specimens cited

Demboski JR, Stone KD, Cook JA 1999. Further perspectives on the Haida Gwaii glacial refugium. Evolution: 53: 2008-2012. UAM specimens cited

Dragoo JW, Honeycutt RL 1997. Systematics of mustelid-like carnivores. Journal of Mammalogy 78: 426-443. UAM specimens cited

Duszynski DW, Lynch AJ, Cook JA 2007. Coccidia (Apicomplexa: Eimeriidae) infecting cricetid rodents from Alaska, USA, and northeastern Siberia, Russia, and description of a new    Eimeria species from Myodes rutilus, the northern red-backed vole. Comparative Parasitology 74: 294-311. UAM specimens cited

Eddingsaas AA, Jacobsen BK, Lessa EP, Cook JA 2004. Evolutionary history of the arctic ground squirrel (Spermophilus parryii) in Nearctic Beringia. Journal of Mammalogy 85: 601-610. UAM specimens cited

Fedorov VB, Goropashnaya AV, Boeskorov GG, Cook JA 2008. Comparative phylogeography and demographic history of the wood lemming (Myopus schisticolor): implications for late Quaternary history of the taiga species in Eurasia. Molecular Ecology 17: 598-610. UAM specimens cited

Fedorov VB, Goropashnaya A,V Jaarola M, Cook JA 2003. Phylogeography of lemmings (Lemmus): no evidence for postglacial colonization of Arctic from the Beringian refugium. Molecular Ecology 12: 725-731. UAM specimens cited

Fedorov VB, Goropashnaya AV, Jarrell GH, Fredga K 1999. Phylogeographic structure and mitochondrial DNA variation in true lemmings (Lemmus) from the Eurasian Arctic. Biological Journal of the Linnean Society 66: 357-371. UAM specimens cited

Fedorov VB, Goropashnaya AV 1999. The importance of ice ages in diversification of Arctic collared lemmings (Dicrostonyx): evidence from the mitochondrial cytochrome b region. Hereditas 130: 301-307. UAM specimens cited

Fedorov VB, Stenseth NC 2001. Glacial survival of the Norwegian lemming (Lemmus lemmus) in Scandinavia: inference from mitochondrial DNA variation. Proceedings of the Royal Society of London. Series B: Biological Sciences 268: 809-814. UAM specimens cited

Fedorov VB, Stenseth NC 2002. Multiple glacial refugia in the North American Arctic: inference from phylogeography of the collared lemming (Dicrostonyx groenlandicus). Proceedings of the Royal Society of London. Series B: Biological Sciences 269: 2071-2077. UAM specimens cited

Fleming MA, Cook JA 2002. Phylogeography of endemic ermine (Mustela erminea) in southeast Alaska. Molecular Ecology 11: 795-807. UAM specimens cited

Flynn JJ, Finarelli JA, Zehr S, Hsu J, Nedbal MA 2005. Molecular phylogeny of the Carnivora (Mammalia): assessing the impact of increased sampling on resolving enigmatic relationships. Systematic Biology 54: 317-337. UAM specimens cited

Galbreath KE, Cook JA 2004. Genetic consequences of Pleistocene glaciations for the tundra vole (Microtus oeconomus) in Beringia. Molecular Ecology 13: 135-148. UAM specimens cited

Galbreath KE, Cook JA, Eddingsaas AA, DeChaine EG 2011. Diversity and demography in Beringia: multilocus tests of paleodistribution models reveal the complex history of arctic ground squirrels. Evolution 65: 1879-1896. UAM specimens cited

Gelatt TS, Davis CS, Siniff DB, Strobeck C 2001. Molecular evidence for twinning in Weddell seals (Leptonychotes weddellii). Journal of Mammalogy 82: 491-499. UAM specimens cited

Goethert HK, Cook JA, Lance EW, Telford III SR 2006. Fay and Rausch 1969 revisited:    Babesia microti in Alaskan small mammals. Journal of Parasitology 92: 826-831. UAM specimens used

Goldsmith EW, Renshaw B, Clement CJ, Himschoot EA, Hundertmark KJ, Hueffer K. 2015. Population Structure of Two Rabies Hosts Relative to the Known Distribution of Rabies Virus Variants in Alaska. Molecular ecology. 25: 675-688. UAM specimens cited

Gunderson AM, Jacobsen BK, Olson LE 2009. Revised distribution of the Alaska marmot,    Marmota broweri, and confirmation of parapatry with hoary marmots. Journal of Mammalogy 90: 859-869. UAM specimens cited

Gunderson AM, Lanier HC, Olson LE 2012. Limited phylogeographic structure and genetic variation in Alaska's arctic and alpine endemic, the Alaska marmot. Journal of Mammalogy 93: 66-75. UAM specimens cited

Halanych KM, Demboski JR, van Vuuren BJ, Klein DR, Cook JA 1999. Cytochrome bphylogeny of North American hares and jackrabbits (Lepus, Lagomorpha) and the effects of saturation in outgroup taxa. Molecular Phylogenetics and Evolution 11: 213-221. UAM specimens cited

Haukisalmi V, Wickström L, Hantula J, Henttonen H 2001. Taxonomy, genetic differentiation and Holarctic biogeography of Paranoplocephala spp.(Cestoda: Anoplocephalidae) in collared lemmings (Dicrostonyx; Arvicolinae). Biological Journal of the Linnean Society 74: 171-196. UAM specimens cited

Haynes TB, Campbell MA, Neilson JL, Lopez JA 2013. Molecular identification of seabird remains found in humpback whale feces. Marine Ornithology 41: 161-166. UAM specimens used

Henshaw MD, LeDuc RG, Chivers SJ, Dizon AE 1997. Identifying beaked whales (family Ziphiidae) using mtDNA sequences. Marine Mammal Science 13: 487-495. UAM specimens cited

Hope AG, Panter N, Cook JA, Talbot SL, Nagorsen DW. 2014. Multilocus phylogeography and systematic revision of North American water shrews (genus: Sorex). Journal of Mammalogy 95: 722-738. UAM specimens cited

Hope AG, Speer KA, Demboski JR, Talbot SL, Cook JA 2012. A climate for speciation: Rapid spatial diversification within the Sorex cinereus complex of shrews. Molecular Phylogenetics and Evolution 64: 671-684. UAM specimens cited

Hope AG, Waltari E, Dokuchaev NE, Abramov S, Dupal T, Tsvetkova A, Henttonen H, MacDonald SO, Cook JA 2010. High-latitude diversification within Eurasian least shrews and Alaska tiny shrews (Soricidae). Journal of Mammalogy 91: 1041-1057. UAM specimens cited

Hope AG, Waltari E, Fedorov VB, Goropashnaya AV, Talbot SL, Cook JA 2011. Persistence and diversification of the Holarctic shrew, Sorex tundrensis (Family Soricidae), in response to climate change. Molecular Ecology 20: 4346-4370. UAM specimens cited

Hope AG, Waltari E, Payer DC, Cook JA, Talbot SL 2013. Future distribution of tundra refugia in northern Alaska. Nature Climate Change 3: 931-938. UAM specimens cited

Hornsby AD, Matocq MD 2012. Differential regional response of the bushy-tailed woodrat (Neotoma cinerea) to late Quaternary climate change. Journal of Biogeography 39: 289-305. UAM specimens cited

Hornsby AD, Matocq MD 2014. Patterns of evolutionary divergence and convergence in the bushy-tailed woodrat (Neotoma cinerea) across western North America. Journal of Mammalian Evolution 21: 243-256. UAM specimens cited

Kennedy LJ, Angles JM, Barnes A, Carmichael LE, Radford AD, Ollier WE, Happ GM 2007. DLA-DRB1, DQA1, and DQB1 alleles and haplotypes in North American gray wolves. Journal of Heredity 98: 491-499. UAM specimens used

Kerhoulas NJ, Arbogast BS 2010. Molecular systematics and Pleistocene biogeography of Mesoamerican flying squirrels. Journal of Mammalogy 91: 654-667. UAM specimens cited

Kingsley EP, Manceau M, Wiley CD, Hoekstra HE 2009. Melanism in Peromyscus is caused by independent mutations in Agouti. PLoS One 4: e6435. UAM specimens cited

Kirby DP, Buckley M, Promise E, Trauger SA, Holdcraft TR 2013. Identification of collagen-based materials in cultural heritage. Analyst 138: 4849-4858. UAM specimens cited

Koepfli K-P, Deere KA, Slater GJ, Begg C, Begg K, Grassman L, Lucherini M, Veron G, Wayne RK 2008. Multigene phylogeny of the Mustelidae: Resolving relationships, tempo and biogeographic history of a mammalian adaptive radiation. BMC Biology 6: 10. UAM specimens cited

Koepfli K-P, Gompper ME, Eizirik E, Ho C-C, Linden L, Maldonado JE, Wayne RK 2007. Phylogeny of the Procyonidae (Mammalia: Carnivora): molecules, morphology and the Great American Interchange. Molecular Phylogenetics and Evolution 43: 1076-1095. UAM specimens cited

Koepfli K-P, Wayne RK 2003. Type I STS markers are more informative than cytochrome b in phylogenetic reconstruction of the Mustelidae (Mammalia: Carnivora). Systematic Biology 52: 571-593. UAM specimens cited

Lanier HC, Olson LE 2013. Deep barriers, shallow divergences: reduced phylogeographical structure in the collared pika (Mammalia: Lagomorpha: Ochotona collaris). Journal of Biogeography 40: 466-478. UAM specimens cited

Lanier HC, Olson LE 2009. Inferring divergence times within pikas (Ochotona spp.) using mtDNA and relaxed molecular dating techniques. Molecular Phylogenetics and Evolution 53: 1-12. UAM specimens cited

Lin Y-H, Waddell PJ, Penny D 2002. Pika and vole mitochondrial genomes increase support for both rodent monophyly and glires. Gene 294: 119-129. UAM specimens cited

Liu S, Lorenzen ED, Fumagalli M, Li B, Harris K, Xiong Z, Zhou L, Korneliussen TS, Somel M, Babbitt C 2014. Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears. Cell 157: 785-794. UAM specimens cited

Lucid M, Cook J 2007. Cytochrome b haplotypes suggest an undescribed Peromyscus species from the Yukon. Canadian Journal of Zoology 85: 916-919. UAM specimens cited

Lucid MK, Cook JA 2004. Phylogeography of Keen's mouse (Peromyscus keeni) in a naturally fragmented landscape. Journal of Mammalogy 85: 1149-1159. UAM specimens cited

Maldonado JE, Davila FO, Stewart BS, Geffen E, Wayne RK 1995. Intraspecific genetic differentiation in California sea lions (Zalophus californianus) from southern California and the Gulf of California. Marine Mammal Science 11: 46-58. UAM specimens cited

Matson CW, Baker RJ 2001. DNA sequence variation in the mitochondrial control region of red-backed voles (Clethrionomys). Molecular Biology and Evolution 18: 1494-1501. UAM specimens cited

Melo-Ferreira J, Boursot P, Carneiro M, Esteves PJ, Farelo L, Alves PC 2012. Recurrent introgression of mitochondrial DNA among hares (Lepus spp.) revealed by species-tree inference and coalescent simulations. Systematic Biology 61: 367-381. UAM specimens cited

Melo-Ferreira J, Vilela J, Fonseca MM, da Fonseca RR, Boursot P, Alves PC 2014. The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression. Genome Biology and Evolution 6: 886-896. UAM specimens cited

Mouchaty S, Cook JA, Shields GF 1995. Phylogenetic analysis of northern hair seals based on nucleotide sequences of the mitochondrial cytochrome b gene. Journal of Mammalogy 76: 1178-1185. UAM specimens cited

Palo JU, Väinölä R 2006. The enigma of the landlocked Baikal and Caspian seals addressed through phylogeny of phocine mitochondrial sequences. Biological Journal of the Linnean Society 88: 61-72. UAM specimens cited

Pengilly D, Jarrell GH, MacDonald SO 1983. Banded karyotypes of Peromyscus sitkensis from Baranof Island, Alaska. Journal of Mammalogy 64: 682-685. UAM specimens cited

Ridling SK, Scudder GG, Sikes DS, LaBounty K 2014. Sitka Bioblitz Discovery Produces First Notonecta (Hemiptera: Notonectidae) Recorded in Alaska. Proceedings of the Entomological Society of Washington 116: 195-196. UAM specimens cited

Roberts TE, Davenport TR, Hildebrandt KB, Jones T, Stanley WT, Sargis EJ, Olson LE 2010. The biogeography of introgression in the critically endangered African monkey Rungwecebus kipunji. Biology Letters 6: 233-237. UAM specimens cited

Roberts TE, Lanier HC, Sargis EJ, Olson LE 2011. Molecular phylogeny of treeshrews (Mammalia: Scandentia) and the timescale of diversification in Southeast Asia. Molecular Phylogenetics and Evolution 60: 358-372. UAM specimens cited

Roberts TE, Sargis EJ, Olson LE 2009. Networks, trees, and treeshrews: assessing support and identifying conflict with multiple loci and a problematic root. Systematic Biology 58: 257-270. UAM specimens cited

Ruedi M, Mayer F 2001. Molecular systematics of bats of the genus Myotis (Vespertilionidae) suggests deterministic ecomorphological convergences. Molecular Phylogenetics and Evolution 21: 436-448. UAM specimens cited

Runck AM, Cook JA 2005. Postglacial expansion of the southern red-backed vole (Clethrionomys gapperi) in North America. Molecular Ecology 14: 1445-1456. UAM specimens cited

Runck AM, Matocq MD, Cook JA 2009. Historic hybridization and persistence of a novel mito-nuclear combination in red-backed voles (genus Myodes). BMC Evolutionary Biology 9: 114. UAM specimens cited

Seymour J, Horstmann-Dehn L, Wooller M 2014. Proportion of higher trophic-level prey in the diet of Pacific walruses (Odobenus rosmarus divergens). Polar Biology 37: 941-952. UAM specimens cited

Sheafor BA 2003. Metabolic enzyme activities across an altitudinal gradient: an examination of pikas (genus Ochotona). Journal of Experimental Biology 206: 1241-1249. UAM specimens cited

Sikes DS, Stockbridge J 2013. Description of Caurinus tlagu, new species, from Prince of Wales Island, Alaska (Mecoptera, Boreidae, Caurininae). ZooKeys: 35. UAM specimens cited

Slowik J, Blagoev GA 2012. A survey of spiders (Arachnida: Araneae) of Prince of Wales Island, Alaska; combining morphological and DNA barcode identification techniques. UAM specimens cited

Small MP, Stone KD, Cook JA 2003. American marten (Martes americana) in the Pacific Northwest: population differentiation across a landscape fragmented in time and space. Molecular Ecology 12: 89-103. UAM specimens cited

Sonsthagen SA, Jay CV, Fischbach AS, Sage GK, Talbot SL 2012. Spatial genetic structure and asymmetrical gene flow within the Pacific walrus. Journal of Mammalogy 93: 1512-1524. UAM specimens cited

Stadelmann B, Lin L-K, Kunz TH, Ruedi M 2007. Molecular phylogeny of New World Myotis (Chiroptera, Vespertilionidae) inferred from mitochondrial and nuclear DNA genes. Molecular Phylogenetics and Evolution 43: 32-48. UAM specimens cited

Steppan SJ, Akhverdyan MR, Lyapunova EA, Fraser DG, Vorontsov NN, Hoffmann RS, Braun MJ 1999. Molecular phylogeny of the marmots (Rodentia: Sciuridae): tests of evolutionary and biogeographic hypotheses. Systematic Biology 48: 715-734. UAM specimens cited

Stone KD, Cook JA 2002. Molecular evolution of Holarctic martens (genus Martes, Mammalia: Carnivora: Mustelidae). Molecular Phylogenetics and Evolution 24: 169-179. UAM specimens cited

Stone KD, Cook JA 2000. Phylogeography of black bears (Ursus americanus) of the Pacific Northwest. Canadian Journal of Zoology 78: 1218-1223. UAM specimens cited

Stone KD, Flynn RW, Cook JA 2002. Post-glacial colonization of northwestern North America by the forest-associated American marten (Martes americana, Mammalia: Carnivora: Mustelidae). Molecular Ecology 11: 2049-2063. UAM specimens cited

Streicker DG, Turmelle AS, Vonhof MJ, Kuzmin IV, McCracken GF, Rupprecht CE 2010. Host phylogeny constrains cross-species emergence and establishment of rabies virus in bats. Science 329: 676-679. UAM specimens cited

Tomasik E, Cook JA 2005. Mitochondrial phylogeography and conservation genetics of wolverine (Gulo gulo) of northwestern North America. Journal of Mammalogy 86: 386-396. UAM specimens cited

Waddell PJ, Kishino H, Ota R 2001. A phylogenetic foundation for comparative mammalian genomics. Genome Informatics Series 12: 141-154. UAM specimens cited

Waltari E, Cook JA 2005. Hares on ice: phylogeography and historical demographics of Lepus arcticusL. othus, and L. timidus (Mammalia: Lagomorpha). Molecular Ecology 14: 3005-3016. UAM specimens cited

Waltari E, Demboski JR, Klein DR, Cook JA 2004. A molecular perspective on the historical biogeography of the northern high latitudes. Journal of Mammalogy 85: 591-600. UAM specimens cited

Weckworth BV, Dawson NG, Talbot SL, Flamme MJ, Cook JA 2011. Going coastal: shared evolutionary history between coastal British Columbia and Southeast Alaska wolves (Canis lupus). PLoS One 6: e19582. UAM specimens cited

Weckworth BV, Talbot S, Sage GK, Person DK, Cook J 2005. A signal for independent coastal and continental histories among North American wolves. Molecular Ecology 14: 917-931. UAM specimens cited

Weckworth BV, Talbot SL, Cook JA 2010. Phylogeography of wolves (Canis lupus) in the Pacific Northwest. Journal of Mammalogy 91: 363-375. UAM specimens cited

Weksler M, Lanier HC, Olson LE 2010. Eastern Beringian biogeography: historical and spatial genetic structure of singing voles in Alaska. Journal of Biogeography 37: 1414-1431. UAM specimens cited

Wickström L, Hantula J, Haukisalmi V, Henttonen H 2001. Genetic and morphometric variation in the Holarctic helminth parasite Andrya arctica (Cestoda, Anoplocephalidae) in relation to the divergence of its lemming hosts (Dicrostonyx spp.). Zoological Journal of the Linnean Society 131: 443-457. UAM specimens cited

Yang D-S, Kenagy G 2009. Nuclear and mitochondrial DNA reveal contrasting evolutionary processes in populations of deer mice (Peromyscus maniculatus). Molecular Ecology 18: 5115-5125.  UAM specimens cited

Zheng X, Arbogast BS, Kenagy G 2003. Historical demography and genetic structure of sister species: deermice (Peromyscus) in the North American temperate rain forest. Molecular Ecology 12: 711-724. UAM specimens cited



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